How to Read the results
The structure of the result txt file
After calculating, you will get the results in the folder: /example/. Here we use the percentage of true positive contacts among the top 𝑁 predicted contacts to evaluate the results of our methods. In addition, we also evaluate the accuracy of 𝑡𝑜𝑝 𝐿/𝑘 (𝑘 =20) where 𝐿 is the length of one monomer of the homodimer.
Here is the structure of result file:
the top {𝑁} predicted contacts to evaluate the results:
Each line consists of 4 elements:
1、ranking of residue pairs 2、Residue1's number
3、Residue2's number 4、score of residue pairs
Example:
#The top20predictions:
Number Residue1 Residue2 Score
1 11 38 0.9674
2 139 142 0.9418
3 142 143 0.9282
4 135 138 0.9234
5 131 134 0.9189
6 11 143 0.9125
7 55 211 0.8962
8 54 210 0.8929
9 7 150 0.8927
10 7 147 0.8895
11 138 139 0.8814
12 55 209 0.8787
13 7 146 0.8754
14 12 41 0.8740
15 55 210 0.8694
16 42 142 0.8658
17 40 203 0.8596
18 14 41 0.8593
19 43 157 0.8588
20 134 135 0.8547